Publications
All publications where NAPI partners and/or core facilities have contributed mass spectrometry expertise are provided below (beginning November 2020). Where NAPI partners are not included in the author list, one or more NAPI core facilities have been acknowledged for support in generating mass spectrometry/proteomics data contained within the manuscript.
2021
Ramberg, H. et al. Proteomic analyses Identify Major Vault Protein as a Prognostic Biomarker for Fatal Prostate Cancer. Carcinogenesis. doi:10.1093/carcin/bgab015.
Quiles-Jiménez, A. et al. DNA glycosylase Neil3 regulates vascular smooth muscle cell biology during atherosclerosis development. Atherosclerosis. doi:10.1016/j.atherosclerosis.2021.02.023.
Oveland, E. et al. Cuprizone and EAE mouse frontal cortex proteomics revealed proteins altered in multiple sclerosis. Sci. Rep. 11, 7174
Aasebø, E. et al. The Constitutive Extracellular Protein Release by Acute Myeloid Leukemia Cells—A Proteomic Study of Patient Heterogeneity and Its Modulation by Mesenchymal Stromal Cells. Cancers 13, 1509
Kavli, B. et al. RPA2 winged-helix domain facilitates UNG-mediated removal of uracil from ssDNA; implications for repair of mutagenic uracil at the replication fork. Nucleic Acids Res. doi:10.1093/nar/gkab195.
Askarian, F. et al. The lytic polysaccharide monooxygenase CbpD promotes Pseudomonas aeruginosa virulence in systemic infection. Nat. Commun. 12, 1230
Skogvold, H. B. et al. Bridging the polar and hydrophobic metabolome in single-run untargeted liquid chromatography-mass spectrometry dried blood spot metabolomics for clinical purposes. medRxiv 2021.03.22.21254119 (2021) doi:10.1101/2021.03.22.21254119.
Bossche, T. V. D. et al. Critical Assessment of Metaproteome Investigation (CAMPI): A Multi-Lab Comparison of Established Workflows. bioRxiv 2021.03.05.433915 (2021) doi:10.1101/2021.03.05.433915.
Martinez-Val, A. et al. Spatial-proteomics reveal in-vivo phospho-signaling dynamics at subcellular resolution. bioRxiv 2021.02.02.425898 (2021) doi:10.1101/2021.02.02.425898.
Bascuñana, P., Brackhan, M. & Pahnke, J. Machine Learning-Supported Analyses Improve Quantitative Histological Assessments of Amyloid-β Deposits and Activated Microglia. J. Alzheimers Dis. 79, 597–605.
Namasivayam, V. et al. C@PA: Computer-Aided Pattern Analysis to Predict Multitarget ABC Transporter Inhibitors. J. Med. Chem. (2021) doi:10.1021/acs.jmedchem.0c02199.
Mosleth, E. F. et al. ‘Cerebrospinal fluid proteome shows disrupted neuronal development in multiple sclerosis’, Scientific reports, 11(1), p. 4087.
Roberg-Larsen, H., Wilson, S. R. and Lundanes, E. ‘Recent advances in on-line upfront devices for sensitive bioanalytical nano LC methods’, Trends in analytical chemistry: TRAC, 136, p. 116190.
Skottvoll, F. S. et al. ‘Electromembrane Extraction and Mass Spectrometry for Liver Organoid Drug Metabolism Studies’, Analytical chemistry, 93(7), pp. 3576–3585.
Stamnaes, J. et al. ‘In Well-Treated Celiac Patients Low-Level Mucosal Inflammation Predicts Response to 14-day Gluten Challenge’, Advancement of science, 8(4), p. 2003526.
Zawadzka, M. et al. ‘Searching for a UV-filter in the eyes of high-flying birds’, Scientific reports, 11(1), p. 273.
Burger, B., Vaudel, M. and Barsnes, H. ‘Importance of Block Randomization When Designing Proteomics Experiments’, Journal of proteome research, 20(1), pp. 122–128.
2020
Kogler, S. et al. “Organoid-in-a-column” coupled on-line with liquid chromatography-mass spectrometry. bioRxiv 2020.09.08.282756 (2020) doi:10.1101/2020.09.08.282756.
Harrison, S. P. et al. Scalable production of tissue-like vascularised liver organoids from human PSCs. bioRxiv 2020.12.02.406835 (2020) doi:10.1101/2020.12.02.406835.
Hernandez-Valladares, M. et al. Biological characteristics of aging in human acute myeloid leukemia cells: the possible importance of aldehyde dehydrogenase, the cytoskeleton and altered transcriptional regulation. Aging 12, 24734–24777
Louwe, M. C. et al. Absence of NLRP3 Inflammasome in Hematopoietic Cells Reduces Adverse Remodeling After Experimental Myocardial Infarction. JACC Basic Transl. Sci. 5, 1210–1224
Tadele, D. S. et al. A cell competition–based small molecule screen identifies a novel compound that induces dual c-Myc depletion and p53 activation. J. Biol. Chem. 296, 100179
Nymark, M. et al. Functional studies of CpSRP54 in diatoms show that the mechanism of thylakoid protein insertion differs from plants and green algae. Plant J. doi:10.1111/tpj.15149
Tsjokajev, A. et al. Mass spectrometry-based measurements of cyclic adenosine monophosphate in cells, simplified using reversed phase liquid chromatography with a polar characterized stationary phase. J. Chromatogr. B 1160, 122384
Michalak, L. et al. Microbiota-directed fibre activates both targeted and secondary metabolic shifts in the distal gut. Nat. Commun. 11, 5773
