MetaMass is a software tool for the meta-analysis of sub-cellular proteomics data, developed in the group of NAPI partner Fridtjof Lund-Johansen. You can learn more in the associated publication on the Nature Methods website.  

MetaMass Excel File. Click to Download
MetaMass User Manual. Click image to open PDF (and download).

Galaxy for Proteomics

List of proteomics software available in Galaxy. Click to open PDF.